Combined Delivery of a Lipopolysaccharide‐Binding Peptide and the Heme Oxygenase‐1 Gene Using Deoxycholic Acid‐Conjugated Polyethylenimine for the Treatment of Acute Lung Injury

A ternary complex comprising plasmid DNA, lipopolysaccharide‐binding peptide (LBP), and deoxycholic acid‐conjugated polyethylenimine (PEI‐DA) is prepared for combinational therapy of acute lung injury (ALI). The LBP is designed as an anti‐inflammatory peptide based on the lipopolysaccharide (LPS)‐binding domain of HMGB‐1. In vitro cytokine assays show that LBP reduces levels of proinflammatory cytokines by inhibiting LPS. PEI‐DA is synthesized as the gene carrier by conjugation of deoxycholic acid to low‐molecular weight polyethylenimine (2 kDa, PEI2k). PEI‐DA has higher transfection efficiency than high‐molecular weight polyethylenimine (25 kDa, PEI25k). The ternary complex of an HO‐1 plasmid (pHO‐1), PEI‐DA, and LBP is prepared as a combinational system to deliver the therapeutic gene and peptide. The transfection efficiency of the ternary complex is higher than that of the pHO‐1/PEI‐DA binary complex. The ternary complex also reduces TNF‐α secretion in LPS‐activated Raw264.7 macrophage cells. Administration of the ternary complex into the lungs of an animal ALI model by intratracheal injection induces HO‐1 expression and reduces levels of proinflammatory cytokines more efficiently than the pHO‐1/PEI‐DA binary complex or LBP alone. In addition, the ternary complex reduces inflammation in the lungs. Therefore, the pHO‐1/PEI‐DA/LBP ternary complex may be an effective treatment for ALI.

     

Comparative and evolutionary studies of mammalian arylsulfatase and sterylsulfatase genes and proteins encoded on the X-chromosome

At least 19 sulfatase genes have been reported on the human genome, including four arylsulfatase (ARS) genes (ARSD; ARSE; ARSF; ARSH) and a sterylsulfatase (STS) gene located together on the X-chromosome. Bioinformatic analyses of mammalian genomes were undertaken using known human STS and ARS amino acid sequences to study the evolution of these genes and proteins encoded on eutherian and marsupial genomes. Several domain regions and key residues were conserved including signal peptides, active site residues, metal (Ca²⁺) and substrate binding sequences, transmembranes and N-glycosylation sites. Phylogenetic analyses describe the relationships and potential origins of these genes during mammalian evolution. Primate ARSH enzymes lacked signal peptide sequences which may influence their biological functions. CpG117 and CpG92 were detected within the 5′ region of the human STS and ARSD genes, respectively, and miR-205 within the 3′-UTR for the human STS gene, using bioinformatic methods A proposal is described for a primordial invertebrate STS-like gene serving as an ancestor for unequal cross over events generating the gene complex on the eutherian mammalian X-chromosome.     

具有遗传性疾病和性状的遗传位点分析

随着信息技术的进步和发展,现代生物学越来越多地将这些技术用于大规模生物数据的收集、分析、挖掘等过程.大量计算机技术,特别是统计方法被用来进行复杂疾病的分析.大量研究表明,人体的许多表型性状差异以及对药物和疾病的易感性等都可能与某些位点相关联,或和包含有多个位点的基因相关联.因此,定位与性状或疾病相关联的位点在染色体或基因中的位置,能帮助研究人员了解性状和一些疾病的遗传机理,也能使人们对致病位点加以干预,防止一些遗传病的发生.利用随机森林方法、Bootstrap重抽样、logistic回归等大数据分析方法,意在解决优化生物学位点关联性分析中单一致病位点识别、多位点相互作用和多性状位点关联性分析等子问题.     

Fluorous Tagged Peptides for Intracellular Delivery and Biomedical Imaging

Fluorous tagged peptides have shown promising features for biomedical applications such as drug delivery and multimodal imaging. The bioconjugation of fluoroalkyl ligands onto cargo peptides greatly enhances their proteolytic stability and membrane penetration via a proposed “fluorine effect”. The tagged peptides also efficiently deliver other biomolecules such as DNA and siRNA into cells via a co-assembly strategy. The fluoroalkyl chains on peptides with antifouling properties enable efficient gene delivery in the presence of serum proteins. Besides intracellular biomolecule delivery, the amphiphilic peptides can be used to stabilized perfluorocarbon-filled microbubbles for ultrasound imaging. The fluorine nucleus on fluoroalkyls provides intrinsic probes for background-free magnetic resonance imaging. Labeling of fluorous tags with radionuclide ¹⁸F also allows tracing the biodistribution of peptides via positron emission tomography imaging. This mini-review will discuss properties and mechanism of the fluorous tagged peptides in these applications.     

Flash Nanoprecipitation Fabrication of PEI@Amorphous Calcium Carbonate Hybrid Nanoparticles for siRNA Delivery

RNA interference (RNAi) is a promising approach for disease treatments. But the development of safe and effective delivery carriers remains a major challenge. Organic–inorganic hybrid nanoparticles (NPs), with the integration of functions from distinct materials, show great potential in small interfering RNA (siRNA) delivery. Herein, pH responsive amorphous calcium carbonate NPs (ACC NPs) are prepared using flash nanoprecipitation and hybrid NPs are constructed by coating ACC NPs with polyethyleneimine (PEI) for efficient siRNA delivery. PEI/ACC NPs show robust pH responsiveness and stability as well as effective siRNA loading and protection. Furthermore, siRNA-loaded PEI/ACC NPs demonstrate enhanced cellular uptake and efficient endosomal escape, mediating improved siRNA delivery compared to pure PEI. These findings suggest that PEI/ACC NPs may have great potential in siRNA delivery for RNAi-based therapy.     

Modification of Branched Poly(ethylene imine) with d-Fructose for Selective Delivery of siRNA into Human Breast Cancer Cells

Branched poly(ethylene imine) (bPEI) is frequently used in RNA interference (RNAi) experiments as a cationic polymer for the delivery of small interfering RNA (siRNA) because of its ability to form stable polyplexes that facilitate siRNA uptake. However, the use of bPEI in gene delivery is limited by its cytotoxicity and a need for target specificity. In this work, bPEI is modified with d- fructose to improve biocompatibility and target breast cancer cells through the overexpressed GLUT5 transporter. Fructose-substituted bPEI (Fru−bPEI) is accessible in three steps starting from commercially available protected fructopyranosides and bPEI. Several polymers with varying molecular weights, degrees of substitution, and linker positions on d- fructose (C1 and C3) are synthesized and characterized with NMR spectroscopy, size exclusion chromatography, and elemental analysis. In vitro biological screenings show significantly reduced cytotoxicity of 10 kDa bPEI after fructose functionalization, specific uptake of siRNA polyplexes, and targeted knockdown of green fluorescent protein (GFP) in triple-negative breast cancer cells (MDA-MB-231) compared to noncancer cells (HEK293T).     

阳离子树脂交换分离-电感耦合等离子体质谱(ICP-MS)法测定地质石膏样品中硼

硼石膏近些年在水泥、沥青混合材料等领域应用广泛,其主要成分为CaSO4·2H2O和B2O3以及其他杂质,因此准确、快速测定石膏样品中的硼元素对石膏的应用、资源综合利用等方面具有重要意义。而国家标准GB/T 5484-2012《石膏分析方法》中并没有硼元素的化学分析方法,且相关文献报道也很少。目前测定硼元素主要采用电感耦合等离子体质谱法（ICP-MS）,样品前处理多采用酸溶法,而碱熔法应用不多,主要原因是碱熔后溶液中产生大量盐分影响等离子体焰的稳定性,而732型阳离子交换树脂能吸附大量的钠离子,同时吸附了钙、镍、铁及稀土等阳离子,减少盐分干扰。基于此原理,本文采用氢氧化钠碱熔-732型阳离子交换树脂交换分离,在线加入铑内标的方式,建立了ICP-MS法测定石膏中硼的方法,同时由于石膏国家标准物质不包含硼元素的含量,采用高纯硫酸钙分别与岩石标准物质、水系沉积物国家标准物质和土壤国家标准物质混合配置成人工标准物质,并讨论了熔矿体系、阳离子加入量与吸附时间、清洗液、同位素的选择等实验条件。本方法的检出限为0.76μg/g,精密度（RSD,n=7）为0.9%~1.7%,相对误差为1.56%~3.96%,加标回收率在97.5%~102%,该方法快速、准确,记忆效应小,适合石膏中硼元素的测定。     

金团簇二十面体结构融合过程中其催化活性的演变

近年来,由有机配体保护的原子精确金属团簇在合成方面已取得了重要进展,其独特的原子结构对一些化学反应产生独特的催化效果.原子精确的团簇催化剂明显不同于纳米颗粒催化剂和单原子催化剂,是一种关联均相和多相的、原子数目确定、尺寸均一、结构精确的新型催化剂.从原子尺度上精确构筑团簇催化剂,探究亚纳米尺度的微观结构对催化性能的影响,为常规催化剂所未能解决的关键科学问题提供解决的机会,为在分子尺度上揭示催化作用机制以及准确关联催化剂结构与催化性能提供新的研究体系,具有重要的科学研究意义.本文设计和使用了三种结构精确的金团簇催化剂,即Au25(PPh3)10(SC2H4Ph)5Cl2,Au38(SC2H4Ph)24和Au25(SC2H4Ph)18,分别由二十面体结构的Au13单元通过中心顶点融合、面融合、体相融合形成的(简写为Auvf、Auff和Aubf),详细研究了这三个金团簇催化剂在二十面体Au13单元的结构融合过程中,其催化活性的演变规律.在催化吡咯烷与O2反应制备γ-丁内酰胺反应中,金团簇催化剂的催化活性顺序为Aubf>Auff>Auvf,表明这三个金团簇中Au13单元的结构随着点、面、体的融合,其催化活性随之增加.同时研究发现,对于同一个Au团簇催化剂,其表面硫醇配体的烷基链越短,其催化活性越高,这主要是由于短链硫醇分子的空间位阻较小,吡咯烷分子更容易进入催化剂的金表面,接触到活性位点,进行催化反应.实验表明,三个团簇金原子均带正电荷,正价金物种可能是催化吡咯烷与O2反应的催化活化物种.研究发现,Aubf团簇表面的活性位数目高于Auff和Auvf团簇的,因此Aubf的催化活性最高;同时,团簇表面配体的烷基链越短,其表面活性位数目也越多,这也进一步解释了表面硫醇配体的烷基链越短,其相应的金团簇催化剂的催化活性越高的原因.吡咯烷与O2在金团簇上反应的可能路径为O2在Au活性位上裂解的O原子和吡咯烷β-H转移至Au活性位的β-H反应脱水后形成亚胺,亚胺经过水解进一步氧化得到产物.这项研究将为在原子层次上调变金属团簇催化剂的结构进而改变其催化性能提供新的思路,对精准设计和构筑高效催化剂具有一定的科学指导意义.     

In Silico Analysis of P450s and Their Role in Secondary Metabolism in the Bacterial Class Gammaproteobacteria

The impact of lifestyle on shaping the genome content of an organism is a well-known phenomenon and cytochrome P450 enzymes (CYPs/P450s), heme-thiolate proteins that are ubiquitously present in organisms, are no exception. Recent studies focusing on a few bacterial species such as Streptomyces, Mycobacterium, Cyanobacteria and Firmicutes revealed that the impact of lifestyle affected the P450 repertoire in these species. However, this phenomenon needs to be understood in other bacterial species. We therefore performed genome data mining, annotation, phylogenetic analysis of P450s and their role in secondary metabolism in the bacterial class Gammaproteobacteria. Genome-wide data mining for P450s in 1261 Gammaproteobacterial species belonging to 161 genera revealed that only 169 species belonging to 41 genera have P450s. A total of 277 P450s found in 169 species grouped into 84 P450 families and 105 P450 subfamilies, where 38 new P450 families were found. Only 18% of P450s were found to be involved in secondary metabolism in Gammaproteobacterial species, as observed in Firmicutes as well. The pathogenic or commensal lifestyle of Gammaproteobacterial species influences them to such an extent that they have the lowest number of P450s compared to other bacterial species, indicating the impact of lifestyle on shaping the P450 repertoire. This study is the first report on comprehensive analysis of P450s in Gammaproteobacteria.     

活性氧响应的新型阳离子共聚物构建及其基因递送性能研究

引入快速、主动释放基因的机制是提升非病毒基因递送效率的关键. 本研究以2-甲基丙烯酰氧乙基磷酰胆碱(MPC)与(2-丙烯酰基)乙基(硼酸苄基)二乙基溴化铵(BD)为单体, 基于可逆加成-断裂链转移聚合(RAFT)反应制备具有活性氧响应性质的聚阳离子嵌段共聚物pM-pBD. 通过静电作用, 阳离子共聚物pM-pBD能够与带负电荷的DNA以分子自组装的方式形成纳米复合物. 其中, 阳离子pBD片段具有活性氧触发电荷反转的特性, 因此, 有助于获得活性氧触发的静电组装复合体结构解离, 从而实现可控基因释放的功能. 理化表征结果表明, pM-pBD与质粒DNA静电复合后能够形成粒径约为99.1 nm, ζ电位约为+13.8 mV, 显微形貌近似球形的纳米复合物. 在加入促过氧化氢产生的抗坏血酸后, 上述pM-pBD基因递送系统的转染效率得到了显著的提升. 因此, 本研究创制的pM-pBD为基因递送系统的可控释放提供了新的解决方案.